PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1702_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 274aa MW: 30009.6 Da PI: 10.6264

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1702_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.5	1.7e-10	248	267	3	22
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D y+WrKYGqK++kgs++pr cra_locus_1702_iso_4_len_1353_ver_3 248 DDYSWRKYGQKPIKGSPHPR 267 99*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.5E-17	199	244	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.9E-10	234	268	IPR003657	WRKY domain
PROSITE profile	PS50811	12.117	241	267	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-8	243	268	IPR003657	WRKY domain
SMART	SM00774	0.0093	246	274	IPR003657	WRKY domain
Pfam	PF03106	8.9E-7	248	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAVELMTGYS RNFGSQLEET SVQEAANSGL ESVEKLIKLL AANSSSSKEM DCKIAADLAV 60 NKFKKVISLL GRTRTGHARF RRGPIVPIKQ VISDTKVYSP TPIQQILPLP PPEGAGVVFD 120 CKDQTMVAAM AAAKTISFSN YSQQNSFISS XXXXXXXXXX XXXXXXXXXX ISSSSGFQIQ 180 VSSSVGGGKP PLSSSSSLKR KCHSENGISG KCSASSGRCH CSKKRRLRMK RVVRVPAISM 240 KMADIPPDDY SWRKYGQKPI KGSPHPRYMQ SKFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	234	RLRMKRVVRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027151585.1	4e-88	probable WRKY transcription factor 15
TrEMBL	A0A068U2Z0	2e-86	A0A068U2Z0_COFCA; Uncharacterized protein
STRING	XP_009764184.1	9e-83	(Nicotiana sylvestris)