PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1702_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 275aa MW: 29975.5 Da PI: 10.5158

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1702_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	50.3	4.9e-16	248	274	3	29
-SS-EEEEEEE--TT-SS-EEEEEE-S CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCts 29 D y+WrKYGqK++kgs++pr+YY+C+s cra_locus_1702_iso_8_len_891_ver_3 248 DDYSWRKYGQKPIKGSPHPRGYYKCSS 274 99***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.5E-17	199	244	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.3E-16	234	274	IPR003657	WRKY domain
PROSITE profile	PS50811	17.316	241	275	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-13	243	274	IPR003657	WRKY domain
SMART	SM00774	1.1E-5	246	275	IPR003657	WRKY domain
Pfam	PF03106	9.9E-12	248	274	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAVELMTGYS RNFGSQLEET SVQEAANSGL ESVEKLIKLL AANSSSSKEM DCKIAADLAV 60 NKFKKVISLL GRTRTGHARF RRGPIVPIKQ VISDTKVYSP TPIQQILPLP PPEGAGVVFD 120 CKDQTMVAAM AAAKTISFSN YSQQNSFISS XXXXXXXXXX XXXXXXXXXX ISSSSGFQIQ 180 VSSSVGGGKP PLSSSSSLKR KCHSENGISG KCSASSGRCH CSKKRRLRMK RVVRVPAISM 240 KMADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	234	RLRMKRVVRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027079190.1	6e-95	probable WRKY transcription factor 15
TrEMBL	A0A068U2Z0	2e-93	A0A068U2Z0_COFCA; Uncharacterized protein
STRING	XP_009764184.1	1e-89	(Nicotiana sylvestris)