PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17242_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 187aa    MW: 21035.8 Da    PI: 9.904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17242_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-172070255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                         ++ GVr+++ +grWvAeI++    + k+ r +lg+f+taeeAa a++ a++ l+g
  cra_locus_17242_iso_1_len_875_ver_3 20 KFVGVRQRP-SGRWVAEIKVT---QmKKLRLWLGTFDTAEEAASAYDSAARLLRG 70
                                         799******.7*********4...5667***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-292080No hitNo description
PROSITE profilePS5103220.2572078IPR001471AP2/ERF domain
PfamPF008471.7E-112070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-282078IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-202079IPR016177DNA-binding domain
SMARTSM003802.8E-312084IPR001471AP2/ERF domain
PRINTSPR003679.9E-82132IPR001471AP2/ERF domain
PRINTSPR003679.9E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MESSQEQAEK HQQVKIYKRK FVGVRQRPSG RWVAEIKVTQ MKKLRLWLGT FDTAEEAASA  60
YDSAARLLRG RNAKTNFTYD NFKFIGMNQT TRLHQLLKLA IMKNLAKSSS SSSXXXNSSS  120
HLPSRAANSS KVYSSVIVAP SFSAPASSSS SHDLIVQEED DEEENRQIFQ GIDDHQELVN  180
SVFLHAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1520801474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248985.12e-41PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A068TQF56e-45A0A068TQF5_COFCA; Uncharacterized protein
STRINGXP_009617997.15e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165