PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17345_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 249aa MW: 26759.4 Da PI: 9.8272

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17345_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	170	227	4	60
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklk 60 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e +L ++e+e+ ++ + +l cra_locus_17345_iso_4_len_1192_ver_3 170 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEKARLlREEAEQNRERYRQLM 227 689***********************************99853888998888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-11	167	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	169	221	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-11	169	227	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.46E-20	171	218	No hit	No description
SuperFamily	SSF57959	1.77E-9	171	222	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.6E-13	172	230	No hit	No description
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
PGVSSVDGAG AVKNVAAVGS KTVDEVWKEI VSGGGGDEGG GRVETMGPRM TLEDFLTKAG 60 AVSEEDVRVA NHTPPPMPLA APSPVAVRPG GYVVDPMMNV QFPVAPGPVV HMQNGPEAFG 120 GLESQLGFGN GMVASASAVI GGQVGNGSTS ARGKRRAAPV EEVALDKATQ QKQRRMIKNR 180 ESAARSRERK QAYTVELESL VTQLEEEKAR LLREEAEQNR ERYRQLMENL IPVVERRRPP 240 RVLRRLNSM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106368.1	6e-82	bZIP transcription factor 12-like
TrEMBL	A0A068TNH0	4e-74	A0A068TNH0_COFCA; Uncharacterized protein
STRING	XP_009615514.1	1e-71	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2771	24	52