PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17471_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CPP
Protein Properties Length: 904aa    MW: 98486.1 Da    PI: 6.5021
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17471_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.53.6e-15430467340
                                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                           +k+CnCkk+kClk+YC+Cfaag +C+e+C C++C N+ 
  cra_locus_17471_iso_1_len_2926_ver_3 430 CKRCNCKKTKCLKLYCDCFAAGIYCAESCACQGCLNRP 467
                                           89**********************************86 PP
2TCR50.63.7e-16517555139
                                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                           ++k+gCnCkkskClkkYCeC+++++ Cs+ C+Ce+C+N 
  cra_locus_17471_iso_1_len_2926_ver_3 517 RHKRGCNCKKSKCLKKYCECYQSNVGCSDGCRCEGCENM 555
                                           589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-14428469IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.644429557IPR005172CRC domain
PfamPF036382.4E-11431466IPR005172CRC domain
SMARTSM011142.7E-17517558IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-11519555IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
XGRGFPQSAF LNNNSSLEKA SSLSASADDF LTNVVNMDGS SLTSSANVTT KSSDNIQETV  60
KTEVDKTESE EKTEAKDVKG KDEIVTGEFE RAEEELQVEP FSAADAYKKP EPGKASPEPS  120
LDVERNSPCD SAFNKQHHRF SKIENTGTGK EAELGCSSQL GSLQNFENQG NCGELTDAQC  180
LEAGQNKMQH DQILKVDLQQ RGVRRRCLQF EDHQRKTIEE NICAHSLSGN AGFPGSSTSP  240
EILEVLESSS LDKPATGSNE PLANVNQPTF SSRHTGNYTV KVPKPSGIGL HLNSIVNAMQ  300
LGSGSTVSLQ SAQRGSLSIL GKKSVSTMSC HSSKNCSISL NGAEGISVSS DDSRHDGVAS  360
IPASSSTSLS PYGVKHFNDS LEPKPIELQP SPGDKRKSVS EIADSVDDFS PSSPKKKRKK  420
TLDTGESNGC KRCNCKKTKC LKLYCDCFAA GIYCAESCAC QGCLNRPDYE DTVLETRQQI  480
ESRNPLAFAP KIIQHIAEPP ASSCGDDGTR FTPASARHKR GCNCKKSKCL KKYCECYQSN  540
VGCSDGCRCE GCENMYGRKG EYSMLKDLVN KHDNVEILDG SFDKKLELAA PRDSLLHNDL  600
CNPHNLSPLT PSFQCSNHGQ TASRSWLSSG RNFASPESGV NFLPPYGMSP VRDVNPENHH  660
MISETSNEFM NLVSFDQELE YGSGETLLPF SPGFDGHKHP IYPPVIPCPP NSSNILKSQM  720
FPGNRNISSS SYLKWRSSPV SPMTQFGGTK LLEVTDFDHR LYSMLDDETP EILKETPPLP  780
NAVKVSSPNK KRVSPPHHGH GNSVGSSSSA AGLRSGRKFI LQAVPSFPPL TPTIDSEPYA  840
DGQDMNDSQG RSRKXPPSFD RYLYRLLSQD SLSLACTKMT LVYSSQEEEL RNKSCKELEG  900
ARDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1643155512121Protein lin-54 homolog
5fd3_B1e-1643155512121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415419KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082997.10.0protein tesmin/TSO1-like CXC 4 isoform X1
TrEMBLA0A068U8C00.0A0A068U8C0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128