PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17488_iso_1
Common Namezct2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 168aa    MW: 18411.8 Da    PI: 8.4008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17488_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00143355123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C+ C++ F++   L  H  +H
  cra_locus_17488_iso_1_len_958_ver_3 33 FECKTCNRQFPSFQALGGHRASH 55
                                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.59E-931101No hitNo description
PfamPF139124.0E-133257IPR007087Zinc finger, C2H2
SMARTSM003550.163355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8273360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
PfamPF139125.7E-1078103IPR007087Zinc finger, C2H2
SMARTSM003550.579101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.20379106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MANCLMLLSQ NRSGEFIDST TSNSSNLNSN RVFECKTCNR QFPSFQALGG HRASHKRPRL  60
GGDLTLSQIP VAAAKPKTHE CSICGLEFAI GQALGGHMRR HRAAMSDSAS GNSASPPRDD  120
RTVVVKKSNI VDDDNDRRVW GLDLNLTPFE NHLEFQLGKI APTVDCFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465761.11e-61zinc finger protein ZAT11
TrEMBLQ5TJD51e-122Q5TJD5_CATRO; Zinc finger DNA-binding protein
STRINGXP_002528469.12e-60(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Publications ? help Back to Top
  1. Pauw B, et al.
    Zinc finger proteins act as transcriptional repressors of alkaloid biosynthesis genes in Catharanthus roseus.
    J. Biol. Chem., 2004. 279(51): p. 52940-8
    [PMID:15465826]