PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17664_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 239aa MW: 27000.3 Da PI: 5.1558

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17664_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	190.5	1.1e-58	7	235	138	374
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211 + +l+iT+vg sk ++eetg+ L++fA++++++++f++ v+++l+dl+ + ++v+ +E++aV + l+l+ cra_locus_17664_iso_1_len_727_ver_3 7 PLEMLKITAVGT----SKAMMEETGKWLSSFARTMNLTLSFKI-VVSDLKDLKQDLFEVEADETVAVYFGLRLF 75 4458******....9*********************9.7999********************** PP GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 ++l + +++ ++v+ ++k+l+P +v+ve ea++ns+ Flerf+eal y+sa+fd+ e l+++++ r+ cra_locus_17664_iso_1_len_727_ver_3 76 TVL----PWPNHLEAVIGVIKHLKPCAIVMVELEANLNSPVFLERFTEALCYFSAVFDCAEGCLSHHDNCRKLT 145 9....66666777********************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 E+++l++ i+n+va e +er++r e+ + Wr + G+ + +ls +a +qa+lll++ + +d y++ ++ ++l cra_locus_17664_iso_1_len_727_ver_3 146 EQVYLREMIQNMVAEEDSERTQRFESINFWRGLCARLGLMETELSPSALCQASLLLKRSAcQDFYTLVNDGKCL 219 ********************************************************9999****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgWk+ p++s+SaW+ cra_locus_17664_iso_1_len_727_ver_3 220 ILGWKGTPILSISAWK 235 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.307	1	214	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-56	7	235	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
ADRHSCPLEM LKITAVGTSK AMMEETGKWL SSFARTMNLT LSFKIVVSDL KDLKQDLFEV 60 EADETVAVYF GLRLFTVLPW PNHLEAVIGV IKHLKPCAIV MVELEANLNS PVFLERFTEA 120 LCYFSAVFDC AEGCLSHHDN CRKLTEQVYL REMIQNMVAE EDSERTQRFE SINFWRGLCA 180 RLGLMETELS PSALCQASLL LKRSACQDFY TLVNDGKCLI LGWKGTPILS ISAWKSSND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-23	1	234	151	378	Protein SCARECROW
5b3h_A	2e-23	1	234	150	377	Protein SCARECROW
5b3h_D	2e-23	1	234	150	377	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067666.1	4e-93	DELLA protein RGL2-like
Refseq	XP_027072016.1	2e-91	DELLA protein RGL2-like
TrEMBL	A0A068USZ7	3e-89	A0A068USZ7_COFCA; Uncharacterized protein
STRING	XP_008351161.1	1e-76	(Malus domestica)
STRING	XP_008390567.1	1e-75	(Malus domestica)
STRING	PGSC0003DMT400056232	2e-77	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8500	17	28