PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17864_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 191aa    MW: 22013 Da    PI: 9.7161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17864_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-133076655
                                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                          + +E++RR++++s f++L +l+P+    + + ls  + Le+A++YIk+Lq
  cra_locus_17864_iso_1_len_1000_ver_3 30 KTIEKNRRNHMKSLFSNLSSLVPHH---SREVLSLPDQLEEATNYIKKLQ 76
                                          789*********************9...7777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.40E-72280No hitNo description
PROSITE profilePS5088812.0042475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-132493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-122892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-93076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-53081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
XPGLDSQSLI IVWLSQMEQN PSSSCKVDRK TIEKNRRNHM KSLFSNLSSL VPHHSREVLS  60
LPDQLEEATN YIKKLQIKLE RMRERRDNLA GSVRMSSDAK ARLKRPRIEV NEMGGSVIEV  120
ILITGSDCQF MFTEVIRVLH EERAEIVRAN YSVKDNTVFH IIHSKIAEFE AYYGSAARVS  180
ERLRKIVDID K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027111804.13e-67transcription factor bHLH162-like
RefseqXP_027162827.13e-67transcription factor bHLH162
SwissprotF4JIJ78e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A068TTE28e-65A0A068TTE2_COFCA; Uncharacterized protein
STRINGXP_002509465.18e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]