PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17919_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 234aa    MW: 26407.9 Da    PI: 8.2241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17919_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.9e-14392199
                                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT-- CS
                                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk 75
                                         ffkv++p   + ++ l lp   + + +  +e +    + ++s  +W+v++   k+ +  + + kGW +Fv+ ++Lk
  cra_locus_17919_iso_1_len_701_ver_3  3 FFKVMMP---GFHAKLLLPLASCPKLK--EEIPE-QAFLTSSKGTWRVEV--GKCANDgICFDKGWDNFVEKHDLK 70
                                         6777744...55666899999997774..44553.3556668889*****..777777799*************** PP

                                         TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3 76 egDfvvFkldgrsefelvvkvfrk 99
                                          g+fvvF+ ++r+ f   v+++++
  cra_locus_17919_iso_1_len_701_ver_3 71 MGEFVVFEQVSRMHF--EVSIYDT 92
                                         ********8777888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.687193IPR003340B3 DNA binding domain
CDDcd100173.85E-16291No hitNo description
SuperFamilySSF1019363.14E-17295IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-11391IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16394IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-10393IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
XRFFKVMMPG FHAKLLLPLA SCPKLKEEIP EQAFLTSSKG TWRVEVGKCA NDGICFDKGW  60
DNFVEKHDLK MGEFVVFEQV SRMHFEVSIY DTTSCKKNPS AVEVPEEQEL LALNGDGHVE  120
HVKRSAAKAL ILMIFIFLLP FFFPREYVEE INEDKATSGP NVHEHAKEAK SGRGRPRRRR  180
SSIEQNESPG DDAIPPSKRG RPSNAAVSTG TNQSDFVKMI CKYNVTRSPS LYIP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630