PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1811_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 468aa    MW: 51015 Da    PI: 7.7405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1811_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88.1e-087191526
                                         --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                         +C++f + GtC  Gd C +aHg
  cra_locus_1811_iso_1_len_2390_ver_3 71 PCPDFKK-GTCAKGDACEYAHG 91
                                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-56692IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3287193IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-57191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-57193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-498129IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15101125IPR000571Zinc finger, CCCH-type
SMARTSM0035625101124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEGKFPGQKD DIRCKTCSKL LEFSAADDLA GFISEALLKA YSHDWTECPF VHPGENARRR  60
DPKKFHYSCV PCPDFKKGTC AKGDACEYAH GVFESWLHPA QYRTRLCKDE TGCSRKVCFF  120
AHKPEELRPL YASTGSAMPS PKSSSVSSMD MATLSPLALG SSSLMMPATX XXXXXXXXXI  180
ATPGSRLKAA LSARDLDLEM ELLGLESIRT QQQQRQQLME EMAGLSSPST WNKDYSRMGD  240
LKPTNLDDVF GSLDPSLLSQ LQSLSPKIST SSTSQLQSPT GLQMRQNMNQ LRASYPSNIS  300
SSPARRSSAM GFDSSAAVAA AVMNSRSAAF AKRSQSFIDR GAVGHRAGVT SAANSPSMMS  360
SHLSDWGSPN GKLEWGFHGE DMNKLRKSAS FGLRNGNAGG MKQHSMTQNV DEPDVSWVHS  420
LVKDVPPSSA NSGIFSPEQK LGGGILHDSS LPSWIDQLYI EQQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104317.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_027110784.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-120C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A068V0110.0A0A068V011_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)