PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1811_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 598aa    MW: 65091.2 Da    PI: 8.0866
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1811_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07201221526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C++f + GtC  Gd C +aHg
  cra_locus_1811_iso_8_len_2779_ver_3 201 PCPDFKK-GTCAKGDACEYAHG 221
                                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.95E-1526137IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-853131IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0366292IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1462142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.43362137IPR020683Ankyrin repeat-containing domain
CDDcd002041.17E-1264137No hitNo description
PROSITE profilePS5008812.07597132IPR002110Ankyrin repeat
SMARTSM002483.8E-497129IPR002110Ankyrin repeat
SMARTSM003562.7E-5196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328201223IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5201221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5201223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4228259IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15231255IPR000571Zinc finger, CCCH-type
SMARTSM0035625231254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MEGKFPGQKD DIRCKTCSKL LEFSAADDLA GFISEVEDKG CDVNELSFWY GRRIGSKKMG  60
FEERNALLIA SLYGSIKVLK YLIETGKLDV NKAYGSEGVT ALHCAVAGGS SFSVEVVKLL  120
LDASADVNSV DANGNKPGDL IVPCLKSLSN SKRKTLEILY TFKVKPCSRA YSHDWTECPF  180
VHPGENARRR DPKKFHYSCV PCPDFKKGTC AKGDACEYAH GVFESWLHPA QYRTRLCKDE  240
TGCSRKVCFF AHKPEELRPL YASTGSAMPS PKSSSVSSMD MATLSPLALG SSSLMMPATX  300
XXXXXXXXXI ATPGSRLKAA LSARDLDLEM ELLGLESIRT QQQQRQQLME EMAGLSSPST  360
WNKDYSRMGD LKPTNLDDVF GSLDPSLLSQ LQSLSPKIST SSTSQLQSPT GLQMRQNMNQ  420
LRASYPSNIS SSPARRSSAM GFDSSAAVAA AVMNSRSAAF AKRSQSFIDR GAVGHRAGVT  480
SAANSPSMMS SHLSDWGSPN GKLEWGFHGE DMNKLRKSAS FGLRNGNAGG MKQHSMTQNV  540
DEPDVSWVHS LVKDVPPSSA NSGIFSPEQK LGGGILHDSS LPSWIDQLYI EQQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104317.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_027110784.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-180C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A068V0110.0A0A068V011_COFCA; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)