PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1811_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 377aa    MW: 41204.6 Da    PI: 7.0564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1811_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-08254274526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C++f + GtC  Gd C +aHg
  cra_locus_1811_iso_9_len_1840_ver_3 254 PCPDFKK-GTCAKGDACEYAHG 274
                                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.68E-1525137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.9E-1634177IPR020683Ankyrin repeat-containing domain
PfamPF127965.6E-951131IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0366292IPR002110Ankyrin repeat
PROSITE profilePS5029715.43362137IPR020683Ankyrin repeat-containing domain
CDDcd002042.27E-1464177No hitNo description
PROSITE profilePS5008812.07597132IPR002110Ankyrin repeat
SMARTSM002483.8E-497129IPR002110Ankyrin repeat
SMARTSM003562.7E-5249275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328254276IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5254274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4281312IPR000571Zinc finger, CCCH-type
SMARTSM0035625284307IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15284308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEGKFPGQKD DIRCKTCSKL LEFSAADDLA GFISEVEDKG CDVNELSFWY GRRIGSKKMG  60
FEERNALLIA SLYGSIKVLK YLIETGKLDV NKAYGSEGVT ALHCAVAGGS SFSVEVVKLL  120
LDASADVNSV DANGNKPGDL IVPCLKSLSN SKRKTLEILL KGVVSEASDE EDEQGNTRAQ  180
SSKEGNEKKE YPIDVSLPDI NNGIYGSDEF RMYTFKVKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPKKFHY SCVPCPDFKK GTCAKGDACE YAHGVFESWL HPAQYRTRLC KDETGCSRKV  300
CFFAHKPEEL RPLYASTGSA MPSPKSSSVS SMDMATLSPL ALGSSSLMMP ATSTPPMSPA  360
AACSSPMATS MWQNKMX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158060.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9LUZ41e-155C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A068V0110.0A0A068V011_COFCA; Uncharacterized protein
STRINGcassava4.1_003107m0.0(Manihot esculenta)