PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18189_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 274aa MW: 31127.3 Da PI: 8.5095

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18189_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	8	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l cra_locus_18189_iso_1_len_821_ver_3 8 RGNFSLQEEQTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 53 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-25	1	57	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.62E-15	2	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.325	3	57	IPR017930	Myb domain
SMART	SM00717	4.6E-17	7	55	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-16	8	53	IPR001005	SANT/Myb domain
CDD	cd00167	8.85E-13	10	53	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
YLRPDIKRGN FSLQEEQTII QLHALLGNRW SAIASHLPKR TDNEIKNYWN THLKKRLTKM 60 GIDPMTHKPK NNALDSSQSK DTANLNHMAQ WESARVEAEA RLVRTAATSI NNPYHFRQCV 120 IPNPNTISLT KDSLLSLPPL GKPPLPSLDT LKASERSSWT NINLHFNVRT LLSPTSVLLP 180 PPFPDNIFTS NNKVAITKEN HAQFRNIMKE GMELQEIMGS SFPHNQVDDH HHVGLLMNPS 240 LLEGSFKFPH EDLLSDDHQV FNNINGVLYD NINL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027152534.1	6e-64	transcription factor MYB106-like
Refseq	XP_027152536.1	6e-64	transcription factor MYB106-like
TrEMBL	A0A2G9H6Z7	2e-63	A0A2G9H6Z7_9LAMI; Uncharacterized protein
STRING	XP_007158642.1	3e-60	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154