PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18199_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 166aa MW: 18813.9 Da PI: 6.2268

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18199_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.9e-43	16	114	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvy cra_locus_18199_iso_1_len_833_ver_3 16 PCAACKFLRRKCLPGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVY 89 7*********************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 G+vg i+ lq+q+ +l++el+++++ cra_locus_18199_iso_1_len_833_ver_3 90 GCVGAISILQRQVLRLQKELDAINA 114 ******************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.39	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-43	16	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDMASSSSSS SYSNSPCAAC KFLRRKCLPG CIFAPYFPPE EPTKFANVHK IFGASNVSKL 60 LNEIQPHQRE DAVNSLAYEA EARLKDPVYG CVGAISILQR QVLRLQKELD AINADLMRYV 120 SNEFPRHQQQ QQQEHGGFDQ NNYEIINHHP NYYNNYNNSG DDPADQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-66	6	124	1	119	LOB family transfactor Ramosa2.1
5ly0_B	1e-66	6	124	1	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766717.1	3e-80	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_009766723.1	3e-80	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_009766732.1	2e-80	PREDICTED: LOB domain-containing protein 25-like isoform X2
Refseq	XP_016507963.1	3e-80	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016507964.1	2e-80	PREDICTED: LOB domain-containing protein 25-like isoform X2
Swissprot	Q8L8Q3	4e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4D3Q4	7e-79	A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBL	A0A1S4D3W5	5e-79	A0A1S4D3W5_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1U7VF65	7e-79	A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
TrEMBL	A0A1U7VF79	5e-79	A0A1U7VF79_NICSY; LOB domain-containing protein 25-like isoform X2
STRING	XP_009766717.1	1e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]