PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18200_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 436aa    MW: 49636.1 Da    PI: 8.259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18200_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.4e-075577123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          y+C++C++sF r  nL+ H r+H
  cra_locus_18200_iso_1_len_1398_ver_3 55 YVCEICNQSFQREQNLQMHRRRH 77
                                          9*********************9 PP
2zf-C2H213.50.00021133155123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           ++C++C+k +  +s++k H + +
  cra_locus_18200_iso_1_len_1398_ver_3 133 WVCEKCSKGYAVQSDYKAHTKIC 155
                                           58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.9E-65478IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-55477No hitNo description
Gene3DG3DSA:3.30.160.609.2E-65477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4065577IPR007087Zinc finger, C2H2
SMARTSM003555.5E-45577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM003558197127IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-5128153No hitNo description
SMARTSM00355150133153IPR015880Zinc finger, C2H2-like
SMARTSM00355270160184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLAGQAFSLP CSEVFPYPNN DQFIPKRKRK PAGTPDPDAE VVYLSPEMLM ESDRYVCEIC  60
NQSFQREQNL QMHRRRHKVP WKLLKRPEKQ EIKKRVYVCP EPTCLHHDPS HALGDLVGIK  120
KHFRRKHSNF KQWVCEKCSK GYAVQSDYKA HTKICGTRGH SCDCGRVFSR VEAFIEHQDA  180
CNGHMRSNYV PSSAAGAGEG TSTHGKNNHL SHSPIFSPPP AAAAAPFLRS HPNFSNKKPA  240
ADHTHTTTTS THVQKKNNLD IHDHLPSYEA RVEKNIINNF SHNLELELFT SSCSLDNNTI  300
NLEDNNIVEE IPEEAFRLRV EAKEISRMAM EEKKFAEEKR KEAKCLIGLA MQEMNEAKRI  360
KEETVAELHA ANVLKECSTS KIIINNNSNI NNNLLQVKCN SCRKDFLTLA QESFGEPNQD  420
GNFNSNSNLM LWTRYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17131182556Zinc finger protein JACKDAW
5b3h_F5e-17131182556Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430PKRKRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073843.11e-142zinc finger protein SHOOT GRAVITROPISM 5-like
TrEMBLA0A068TZN21e-136A0A068TZN2_COFCA; Uncharacterized protein
STRINGXP_010244535.11e-125(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482