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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | cra_locus_18209_iso_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bZIP | ||||||||
| Protein Properties | Length: 211aa MW: 24227.6 Da PI: 8.7911 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 35.2 | 2.7e-11 | 96 | 148 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
++ rr+++NRe+ArrsR RK++ +e+L++ v L N++L ++l + ++
cra_locus_18209_iso_1_len_1661_ver_3 96 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRVGNRELMNRLRFVTHHCN 148
5789*************************************999987777776 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.20.5.170 | 3.7E-10 | 87 | 149 | No hit | No description |
| SMART | SM00338 | 1.3E-13 | 92 | 156 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 10.427 | 94 | 157 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF00170 | 6.6E-9 | 96 | 149 | IPR004827 | Basic-leucine zipper domain |
| SuperFamily | SSF57959 | 4.9E-11 | 96 | 147 | No hit | No description |
| CDD | cd14702 | 1.11E-18 | 97 | 148 | No hit | No description |
| PROSITE pattern | PS00036 | 0 | 99 | 114 | IPR004827 | Basic-leucine zipper domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 211 aa Download sequence Send to blast |
MISSDGLFGS PFPAFETGFT PWDYPDPPFE SETIHFPSLE QQQEPVNSNS GSDNSNSNAN 60 PIPVDSNSGS DEPNGKNNKN SSSGSPGDSS SLIDERKRRR MISNRESARR SRMRKQKHLE 120 NLRNQVNRLR VGNRELMNRL RFVTHHCNLI RNDNDRLRSE SVVLRQRLWD IRQVLHVREL 180 HQQQLASSSS VWPCNNFNFN DQETIPQSLI T |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 95 | 99 | RKRRR |
| 2 | 95 | 116 | RKRRRMISNRESARRSRMRKQK |
| 3 | 108 | 115 | RRSRMRKQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027179696.1 | 4e-77 | basic leucine zipper 25-like | ||||
| TrEMBL | A0A068U4U6 | 6e-74 | A0A068U4U6_COFCA; Uncharacterized protein | ||||
| STRING | XP_006426133.1 | 5e-66 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2820 | 22 | 51 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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