PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18368_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 147aa MW: 16893.9 Da PI: 9.6013

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18368_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.2	3.9e-22	19	59	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+i+n snrqvtfskRr g++KKA+EL++L++ae+a+i++s cra_locus_18368_iso_1_len_439_ver_3 19 KKIDNLSNRQVTFSKRRVGLFKKASELCILTGAEIAIIVYS 59 68**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.19E-21	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.2E-27	11	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.058	11	71	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.14E-27	12	59	No hit	No description
PRINTS	PR00404	5.3E-18	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-20	20	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-18	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-18	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
XNNMMMKKTT QGRKKIEIKK IDNLSNRQVT FSKRRVGLFK KASELCILTG AEIAIIVYSL 60 GNGRYARGSS MFPNEAFHVG ADILEHKQHY ARVSKQLEAE KQRKEMIEDS KIVNGVGGYF 120 WWDDPIDNLG LDELEQYMAS LEELKKX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101434.1	2e-58	agamous-like MADS-box protein AGL62
Refseq	XP_027157595.1	6e-59	agamous-like MADS-box protein AGL62
TrEMBL	A0A068TLW8	2e-55	A0A068TLW8_COFCA; Uncharacterized protein
STRING	XP_009602824.1	1e-44	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2134	22	52