PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18400_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 523aa    MW: 58240.1 Da    PI: 6.3367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18400_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-07241262426
                                           ---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                           +lCrff   G C++G++C ++H+
  cra_locus_18400_iso_1_len_1870_ver_3 241 SLCRFFVN-GLCNRGSQCLYSHS 262
                                           59**5555.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3002.9E-93483IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525404.02E-64087IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5010314.098237264IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056238263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6240262IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4241262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4241267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788265292IPR000571Zinc finger, CCCH-type
SMARTSM003560.043265291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7269292IPR000571Zinc finger, CCCH-type
PfamPF146080.37269289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAFSPTSSSY SAYSSHFALS TELSSEPSSN FGVLPIAALR SKIIEKIQEN RVTLIVGEPG  60
CGKSSQVPQF LLEENMEPIL CTQLLIPEGI EDTNQLLPKM EEEWCSLHNL VQSALNQVAL  120
TYDEIIHTLH RFRPKCLVAS DTVPSYNEAY EFKHMCSFDY EQNGDADSQL GNDDHLELGA  180
GVRKCSSIPF VSSNNSRATE VAKKLAVIVK EMRVHDKKVV YGNQSSHTTT GHNVEAAGDA  240
SLCRFFVNGL CNRGSQCLYS HSIHAKRPPC KFFFSLQGCR NGDSCFFSHD WTPSPLSSSN  300
ANLCVPEDAD ADAESLLRLF PASPDRCILL LDDTNFHFSS HLALHYDPSS IIATTSLPTG  360
STSNPSLTGV KILWGLTHPH QTILSKAGKK HVPWNKVKCV LWFPQLGNEF LEVHKVYVKT  420
FFEYLAVRML GDGLSEMQVI ITLNNTCFSQ LQVEKLARES FFFLRESFPY DEASFGSLSD  480
QCNSRKPMAI SKPISYVFYL RPPSSIEFDD FKAVLNGLLV HTC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117556.10.0DExH-box ATP-dependent RNA helicase DExH8-like
TrEMBLA0A068VBS80.0A0A068VBS8_COFCA; Uncharacterized protein
STRINGXP_008235089.11e-157(Prunus mume)