PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1842_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Nin-like
Protein Properties Length: 234aa    MW: 26543.9 Da    PI: 8.4782
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1842_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK45.21.8e-1469112447
                               RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 
                                           is e+l+++ +++++d+A  Lgv+ ++LKriCR+ GI RWP  
  cra_locus_1842_iso_9_len_2192_ver_3  69 GISREVLEQHSAKKLEDVAVVLGVSRSTLKRICRKCGIFRWPPS 112
                                          6999**************************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.4851139IPR003035RWP-RK domain
PfamPF020423.4E-1370113IPR003035RWP-RK domain
SuperFamilySSF542779.81E-10178234No hitNo description
PROSITE profilePS5174513.95183234IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2405.5E-10184234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALQSXKIGA RIPPWIGASE IAWQARQQPQ KSVMQVDEVN KEQVVSGESD EAAGSRRQAK  60
VRTLDTEYGI SREVLEQHSA KKLEDVAVVL GVSRSTLKRI CRKCGIFRWP PSKARRHNNQ  120
EFVQATRGTI EESSQMQQQP ISDVVSVEPR QERDPLKSQV ENVSTSQMQT TTEAKVVQED  180
DRSIMVKVTC KDDIIKFRLL VSARKVDLEQ EVAMRLNLTV GSFKIKYLDE DGDW