PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18519_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 372aa MW: 42064.1 Da PI: 7.2213

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18519_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 ++pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r cra_locus_18519_iso_1_len_1241_ver_3 14 MMPGFRFHPTDEELVGFYLKRKIQQRPLPI-ELIKQVDIYKYDPWDLPKVASTGEKEWYFYCPRDRKYRNSAR 85 579*************************.89***********9888999************** PP NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl cra_locus_18519_iso_1_len_1241_ver_3 86 PNRVTGAGFWKATGTDRPIYSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 *****************956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-59	14	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.658	14	171	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDEKNDGDKI DDVMMPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP 60 KVASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPTSDSPPPK KLLDKGLPPH DAWAICRIFK KTNSMAQRAL 180 SHAWISSSPF SEPSLPEIFP QYSQFSSENI SCTTETGSNL HLCSNKNDLN PTSTPTFSPL 240 NSMVSKPSFC WANPNGDFPP NFMFSPPTFD VSSMIFNPSP VLIPGGDGNN NNNNKVPENI 300 EFESSNQPQH HHFNSFSSPE IQERTIEFPF NLPTTSIGGG GDDWKSHLSW DSPGNCNSEI 360 STTYSSPNKC YT

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDEKNDGDKI DDVMMPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP  60
KVASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPTSDSPPPK KLLDKGLPPH DAWAICRIFK KTNSMAQRAL  180
SHAWISSSPF SEPSLPEIFP QYSQFSSENI SCTTETGSNL HLCSNKNDLN PTSTPTFSPL  240
NSMVSKPSFC WANPNGDFPP NFMFSPPTFD VSSMIFNPSP VLIPGGDGNN NNNNKVPENI  300
EFESSNQPQH HHFNSFSSPE IQERTIEFPF NLPTTSIGGG GDDWKSHLSW DSPGNCNSEI  360
STTYSSPNKC YT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-52	16	174	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-52	16	174	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-52	16	174	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-52	16	174	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-52	16	174	22	171	NAC domain-containing protein 19
3swm_B	8e-52	16	174	22	171	NAC domain-containing protein 19
3swm_C	8e-52	16	174	22	171	NAC domain-containing protein 19
3swm_D	8e-52	16	174	22	171	NAC domain-containing protein 19
3swp_A	8e-52	16	174	22	171	NAC domain-containing protein 19
3swp_B	8e-52	16	174	22	171	NAC domain-containing protein 19
3swp_C	8e-52	16	174	22	171	NAC domain-containing protein 19
3swp_D	8e-52	16	174	22	171	NAC domain-containing protein 19
4dul_A	7e-52	16	174	19	168	NAC domain-containing protein 19
4dul_B	7e-52	16	174	19	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027154409.1	1e-161	protein FEZ-like
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3XUN7	1e-159	A0A1S3XUN7_TOBAC; putative NAC domain-containing protein 94
TrEMBL	A0A1S4CAZ4	1e-159	A0A1S4CAZ4_TOBAC; putative NAC domain-containing protein 94
TrEMBL	A0A1U7XEB4	1e-159	A0A1U7XEB4_NICSY; putative NAC domain-containing protein 94
STRING	XP_009600694.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]