PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18534_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SRS

Protein Properties

Length: 223aa MW: 23798.3 Da PI: 8.8966

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18534_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	200.3	6e-62	2	139	17	155
DUF702 17 kdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalss 88 kdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq+ a+ss +++++ + ++skr+re + s+l++ cra_locus_18534_iso_1_len_693_ver_3 2 KDCTHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQQLASSSLQQNQQhlRGENSKRPRE----NPSSLAC 71 9*********************************777655554444333247777888886....599 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGleek 155 t+l++++s e+ ++P+evss+avfrcvrvs++d+ +e+++aYqtav+igGhvfkGiLydqGl+++ cra_locus_18534_iso_1_len_693_ver_3 72 TRLPTSSSGLEMVGGQFPAEVSSAAVFRCVRVSAMDEaEEQQYAYQTAVNIGGHVFKGILYDQGLDHQ 139 *********************************55667*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	7.0E-19	2	34	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	9.3E-57	2	137	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	7.9E-29	87	136	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
XKDCTHLRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ QLASSSLQQN QQHLRGENSK 60 RPRENPSSLA CTRLPTSSSG LEMVGGQFPA EVSSAAVFRC VRVSAMDEAE EQQYAYQTAV 120 NIGGHVFKGI LYDQGLDHQT TTAGRYSTAT TGVGGNTSSG GGTDGGGGVH PPQPPPLNLI 180 GTTSSAPTAA TAGITMHMLD HSIYPTPLSA FMAGTQFFPP PRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090043.1	5e-80	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	5e-62	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A1DR76	1e-162	A1DR76_CATRO; DNA-binding protein
STRING	XP_010105273.1	1e-74	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Publications ? help Back to Top
Vom Endt D,Soares e Silva M,Kijne JW,Pasquali G,Memelink J Identification of a bipartite jasmonate-responsive promoter element in the Catharanthus roseus ORCA3 transcription factor gene that interacts specifically with AT-Hook DNA-binding proteins. Plant Physiol., 2007. 144(3): p. 1680-9 [PMID:17496112] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]