PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18775_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 383aa    MW: 43094.8 Da    PI: 7.8087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18775_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.6e-50281532128
                                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                           +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+
  cra_locus_18775_iso_1_len_1435_ver_3  28 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRP 99 
                                           79***************************.89***************8778899******************* PP

                                   NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                           nr+t+sgyWkatg d+ + +++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  cra_locus_18775_iso_1_len_1435_ver_3 100 NRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 153
                                           ****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5527173IPR003441NAC domain
PROSITE profilePS5100555.78627174IPR003441NAC domain
PfamPF023655.5E-2529153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSTSSNQQDE NNNSNNKDND EHDQDMVMPG FRFHPTEEEL IEFYLRRKVE GKRFNVELIT  60
FLDLYRYDPW ELPALAAIGE KEWYFYVPRD RKYRNGDRPN RVTTSGYWKA TGADRMIRTE  120
NFRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPHHETER LQKAEISLCR VYKRAGVEDH  180
PSLPRLLPTR TSSSSSKGGT LPNNKKNNNE TTTTTTTSSS SPNPIESFQN FVGNPNPQKI  240
IDDKVSETSG SSTTDVGTSL GLSQHMSTYI SLAPAATITT TTTLGPDWAC VGGGGGQPSF  300
VAPNSVDDLH RLVNYQQYHH HHHPSLMSST LQPPLPQTSS LSNTLALNNV LPPGSLQAAF  360
NDRLWDWNAM SDQASKDYNN AFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55171747165NO APICAL MERISTEM PROTEIN
1ut4_B1e-55171747165NO APICAL MERISTEM PROTEIN
1ut7_A1e-55171747165NO APICAL MERISTEM PROTEIN
1ut7_B1e-55171747165NO APICAL MERISTEM PROTEIN
4dul_A1e-55171747165NAC domain-containing protein 19
4dul_B1e-55171747165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113345.11e-169NAC domain-containing protein 35-like
RefseqXP_027160821.11e-169NAC domain-containing protein 35
TrEMBLA0A068TNX51e-171A0A068TNX5_COFCA; Uncharacterized protein
STRINGcassava4.1_009166m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446