PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18789_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28359.2 Da    PI: 10.3035
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18789_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29252151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s
  cra_locus_18789_iso_2_len_803_ver_3  2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52
                                         79***********************************************86 PP
2K-box78.12.2e-2675149983
                                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                          + +++ + +q+e+a L++++  Lq+++R+llGe+L+ Ls+k+L++Le+qLe+slk +R+kK+++l+eqi++l +
  cra_locus_18789_iso_2_len_803_ver_3  75 NPSSEIKFWQREVASLRQQLYYLQESHRQLLGEELSGLSVKDLENLENQLESSLKGVRTKKEQVLTEQIKDLHQ 148
                                          678899******************************************************************99 PP

                                K-box  83 k 83 
                                          k
  cra_locus_18789_iso_2_len_803_ver_3 149 K 149
                                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.202154IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-31253IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-30274IPR002100Transcription factor, MADS-box
CDDcd002651.59E-39271No hitNo description
PfamPF003192.0E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-171631IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-173152IPR002100Transcription factor, MADS-box
PfamPF014868.5E-2477149IPR002487Transcription factor, K-box
PROSITE profilePS5129715.18180196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE  60
RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HRQLLGEELS GLSVKDLENL  120
ENQLESSLKG VRTKKEQVLT EQIKDLHQKV FLKRKFRFKF XLSLHLHHVT SIPLQGNILH  180
QENIELYKKV NLIHQENAQL QKKVYGPGCT TEAYKSTEIA RGISNGNGLR APINLQLTLW  240
FYSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-183701077MEF2C
5f28_B4e-183701077MEF2C
5f28_C4e-183701077MEF2C
5f28_D4e-183701077MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087974.21e-103MADS-box transcription factor 23-like
RefseqXP_020551897.11e-103MADS-box transcription factor 23-like
RefseqXP_020551898.11e-103MADS-box transcription factor 23-like
RefseqXP_020551899.11e-103MADS-box transcription factor 23-like
SwissprotQ6EP497e-80MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLW9SKK14e-98W9SKK1_9ROSA; MADS-box transcription factor 27
STRINGXP_010112258.18e-99(Morus notabilis)
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]