PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18789_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27513.2 Da    PI: 9.9579
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18789_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29252151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s
  cra_locus_18789_iso_3_len_940_ver_3  2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52
                                         79***********************************************86 PP
2K-box87.42.9e-2975164998
                                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                          + +++ + +q+e+a L++++  Lq+++R+llGe+L+ Ls+k+L++Le+qLe+slk +R+kK+++l+eqi++l +
  cra_locus_18789_iso_3_len_940_ver_3  75 NPSSEIKFWQREVASLRQQLYYLQESHRQLLGEELSGLSVKDLENLENQLESSLKGVRTKKEQVLTEQIKDLHQ 148
                                          678899******************************************************************** PP

                                K-box  83 kekelqeenkaLrkkl 98 
                                          k + l++en +L kk+
  cra_locus_18789_iso_3_len_940_ver_3 149 KGNILHQENIELYKKV 164
                                          *************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.202154IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-31253IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-30274IPR002100Transcription factor, MADS-box
CDDcd002654.26E-40271No hitNo description
PfamPF003192.0E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-171631IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-173152IPR002100Transcription factor, MADS-box
PfamPF014866.0E-2877164IPR002487Transcription factor, K-box
PROSITE profilePS5129715.88880170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE  60
RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HRQLLGEELS GLSVKDLENL  120
ENQLESSLKG VRTKKEQVLT EQIKDLHQKG NILHQENIEL YKKVNLIHQE NAQLQKKVYG  180
PGCTTEAYKS TEIARGISNG NGLRAPINLQ LTLPETEKNE TPVNLMKLGL KLHXQAAVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-183701077MEF2C
5f28_B2e-183701077MEF2C
5f28_C2e-183701077MEF2C
5f28_D2e-183701077MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087974.21e-118MADS-box transcription factor 23-like
RefseqXP_020551897.11e-118MADS-box transcription factor 23-like
RefseqXP_020551898.11e-118MADS-box transcription factor 23-like
RefseqXP_020551899.11e-118MADS-box transcription factor 23-like
SwissprotQ6EP494e-88MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8LQE71e-111A0A1U8LQE7_GOSHI; MADS-box transcription factor 23-like isoform X1
TrEMBLQ6UGQ71e-112Q6UGQ7_PETHY; MADS-box protein 14
STRINGGorai.008G018100.11e-112(Gossypium raimondii)
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]