PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18789_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 102aa    MW: 12108.7 Da    PI: 10.551
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18789_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-30252151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s
  cra_locus_18789_iso_4_len_481_ver_3  2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52
                                         79***********************************************86 PP
2K-box13.14.1e-0675102936
                                K-box   9 leeakaeslqqelakLkkeienLqreqR 36 
                                          + +++ + +q+e+a L++++  Lq+++R
  cra_locus_18789_iso_4_len_481_ver_3  75 NPSSEIKFWQREVASLRQQLYYLQESHR 102
                                          678899********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.202154IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-31253IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-31274IPR002100Transcription factor, MADS-box
CDDcd002652.06E-39271No hitNo description
PfamPF003193.5E-27350IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-171631IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-173152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE  60
RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-203701077MEF2C
5f28_B8e-203701077MEF2C
5f28_C8e-203701077MEF2C
5f28_D8e-203701077MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165379.11e-56PREDICTED: MADS-box transcription factor 23-like
RefseqXP_019165380.11e-56PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9SZJ63e-49AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A2G9HJJ13e-53A0A2G9HJJ1_9LAMI; MADS box transcription factor
STRINGXP_004289825.16e-55(Fragaria vesca)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]