PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18851_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 289aa MW: 33757.1 Da PI: 8.0723

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18851_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.7	1.7e-24	38	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 +W+ qe+++ + +r e++ ++ ++k++k lWe + kmre+g++rs++qCk+kw+nl +ryk ++++e ++ cra_locus_18851_iso_2_len_1026_ver_3 38 QWSIQETRDFLMIRAELDPTFMETKRNKLLWEVTATKMREKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG-- 108 7******************************************************************97.. PP trihelix 74 essstcpyfdqle 86 ++++p++++l+ cra_locus_18851_iso_2_len_1026_ver_3 109 -MRQQFPFYNELQ 120 .56679**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.29E-24	37	102	No hit	No description
Pfam	PF13837	1.0E-19	38	121	No hit	No description
PROSITE profile	PS50090	6.737	39	95	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEGHPHHHQY SSSLHIDTGG GGGSSGGGGV GGGDRFPQWS IQETRDFLMI RAELDPTFME 60 TKRNKLLWEV TATKMREKGY NRSAEQCKCK WKNLVTRYKG CETMEPEGMR QQFPFYNELQ 120 TIFASRMQRM LWMEAEGGSG ASKKKAVVAQ LSSDEDEDIN ELDSEGERVL VTTNKKKRKI 180 KGSSSSNPIG ASINSSNIET FKEILDDFMK QQLQMEMQWL KAYEAREEER RKREIEWRQT 240 MEALENERLM MDRRWREREE QRKIREEARA EKRDALITAL LNKLRREDF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00481	DAP	Transfer from AT5G01380	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448116.1	1e-120	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	Q9SDW0	1e-69	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A2Z7B1Q6	1e-123	A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b
STRING	XP_009588979.1	1e-119	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4187	23	43