PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18938_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 250aa MW: 29435.5 Da PI: 10.0243

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18938_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.6	3.9e-12	2	81	18	94
--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 +p f+++hg+k ++k ++l++ ++++sW+vkl+ + ++++ ++ ++ W +Fvk +Lk gD ++F++++ s+ cra_locus_18938_iso_1_len_748_ver_3 2 IPHGFVKKHGSK-LSPKCVVLQHkQTNKSWTVKLCRKARKETisyFICKREWPNFVKFYDLKYGDYLLFSMVDVSK 76 9******654.68888999995566***664444447788889*******************998899 PP E..EE CS B3 90 felvv 94 fe v cra_locus_18938_iso_1_len_748_ver_3 77 FEVIV 81 97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.576	1	85	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-9	2	81	IPR003340	B3 DNA binding domain
CDD	cd10017	2.51E-9	2	82	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.5E-12	2	86	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.69E-13	2	89	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.82E-12	171	249	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-10	174	249	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.602	175	250	IPR003340	B3 DNA binding domain
CDD	cd10017	1.34E-6	176	249	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
XIPHGFVKKH GSKLSPKCVV LQHKQTNKSW TVKLCRKARK ETISYFICKR EWPNFVKFYD 60 LKYGDYLLFS MVDVSKFEVI VYGANCLQKL NTLDSSSSSS TSEDSSHDYD FFSSDDDDND 120 DHDIIKTKKQ KAERRKSNAK IIRDEFQAGP SNKLHHQNLM RISRSGTLVC LNVENPYFIV 180 RLRRHHKTYM TMPRPFARKT KMEEKEFVFV KGKDKKGKWE VEIRHRNPRV DMIGGWPCFY 240 KEYGLKEGDN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4888	13	27