PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18989_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 422aa    MW: 46796.1 Da    PI: 6.8313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18989_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.8e-11153178226
                                           --SS-EEEEEEE--TT-SS-E.EEEE CS
                                  WRKY   2 dDgynWrKYGqKevkgsefpr.sYYr 26 
                                           +Dgy+WrKYGqK++ g+++pr +Y+ 
  cra_locus_18989_iso_1_len_2249_ver_3 153 EDGYSWRKYGQKDILGAKYPRyKYFH 178
                                           8********************34554 PP
2WRKY48.51.7e-152102522059
                                           S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                           + r+YYrCt++   gC ++k+v+rs++dp++++itY+g+H+++
  cra_locus_18989_iso_1_len_2249_ver_3 210 VCRGYYRCTHRpvqGCLATKQVQRSDDDPTIFQITYRGRHTCS 252
                                           68********9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.272147249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-26149172IPR003657WRKY domain
SuperFamilySSF1182901.44E-7151176IPR003657WRKY domain
SMARTSM007742.0E-35152253IPR003657WRKY domain
PfamPF031061.4E-7153176IPR003657WRKY domain
SuperFamilySSF1182904.71E-13209253IPR003657WRKY domain
PfamPF031061.5E-13211251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-26212253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MELKNLINEL ILGKELAKQL QIHLNAPTSS HETRELLVHR IMNSYDKALY LLRANVIVTD  60
THSAGMIAGK AESPDPEAQV HAVKIPIVNS IGINKTSEIL LGRGKNLXTS FFVALKESCF  120
YVHIPRMCCR NAVSSWTKFV QVSPGTGLEG PLEDGYSWRK YGQKDILGAK YPRYKYFHSA  180
QFDSESKAVL QNFLSLDCSV SNSSHDLSYV CRGYYRCTHR PVQGCLATKQ VQRSDDDPTI  240
FQITYRGRHT CSQGSSEVNP PPLLPERSEP SLGVNQQQKV LSQAQQSPHE LLMSFQTGLK  300
VITENIDTHN QPFSSLNFSS TSTTDAERYA FFPSIIEGSS TINPSPSFVS PNNSGSSYFS  360
VSPSNVNNFV GNLSSHPSES ELTDIISAAT STTNSPTFGL QNPYNQMEFE PNFTFDNPGF  420
FS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922