PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18989_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 172aa    MW: 19123.9 Da    PI: 9.1167
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18989_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.53e-09153172221
                                           --SS-EEEEEEE--TT-SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefp 21 
                                           +Dgy+WrKYGqK++ g+++p
  cra_locus_18989_iso_2_len_1289_ver_3 153 EDGYSWRKYGQKDILGAKYP 172
                                           8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.741147172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-7149172IPR003657WRKY domain
SuperFamilySSF1182901.96E-6151172IPR003657WRKY domain
PfamPF031066.0E-6153172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MELKNLINEL ILGKELAKQL QIHLNAPTSS HETRELLVHR IMNSYDKALY LLRANVIVTD  60
THSAGMIAGK AESPDPEAQV HAVKIPIVNS IGINKTSEIL LGRGKNLXTS FFVALKESCF  120
YVHIPRMCCR NAVSSWTKFV QVSPGTGLEG PLEDGYSWRK YGQKDILGAK YP