PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18990_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 147aa MW: 16596.5 Da PI: 6.8829

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18990_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.3e-11	17	62	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ah+ + r RR+ri ++f L++l+P + K++ +++Le+A++Y+k L cra_locus_18990_iso_1_len_440_ver_3 17 AHSVAKRERRHRISERFKILQSLVPGgN------KMDTVSMLEEAIHYVKFL 62 899********************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.72	13	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-15	16	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-14	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-8	17	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-13	17	66	No hit	No description
SMART	SM00353	8.7E-12	19	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
XLLLECCKIL VKLSTDAHSV AKRERRHRIS ERFKILQSLV PGGNKMDTVS MLEEAIHYVK 60 FLKTQIWLHQ TIINSSSSVH PNLMAFPNGI YNQTPHDYDS MVPDDDQMGL FLHSSATNSS 120 NLSYEEINMG MAPFDAKMPY XAITTSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015897604.2	6e-37	transcription factor SPATULA
TrEMBL	A0A1J6I9B0	3e-34	A0A1J6I9B0_NICAT; Transcription factor bhlh140

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11714	17	23