PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1901_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29877.2 Da    PI: 4.425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1901_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1977130356
                                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  cra_locus_1901_iso_3_len_1063_ver_3  77 KKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYK 130
                                          56789************************************************9 PP
2HD-ZIP_I/II128.52.8e-4176164189
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          ekkrrl+++qv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEk+y++Lk+++d+l+
  cra_locus_1901_iso_3_len_1063_ver_3  76 EKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKEYDSLKSSFDKLN 149
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLre 89 
                                          ++ ++L ke+e+L++
  cra_locus_1901_iso_3_len_1063_ver_3 150 ADYDSLFKENEKLKN 164
                                          *************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-1963134IPR009057Homeodomain-like
PROSITE profilePS5007117.55672132IPR001356Homeobox domain
SMARTSM003894.2E-1975136IPR001356Homeobox domain
CDDcd000865.26E-1777133No hitNo description
PfamPF000468.4E-1777130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-2078140IPR009057Homeodomain-like
PRINTSPR000313.5E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6112128IPR000047Helix-turn-helix motif
PfamPF021833.4E-12132164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
XLQDERLPSS CSSLEVLDSL WISNSSPPPP PFHASRMVNF SEAEGENSRK REKSFFPQEE  60
ENSGNENFDG YFHHPEKKRR LTADQVQFLE KSFEVENKLE PERKVQLAKE LGLQPRQVAI  120
WFQNRRARYK TKQLEKEYDS LKSSFDKLNA DYDSLFKENE KLKNVXLPGI KQEDAASSAK  180
SDVFDSDSPH CTDGNHSSNV FEAELSDFSQ DEDDNLSISL LQPSLCFPKL EDECYDELQP  240
NSSNLGFSIE DQASWFWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARYKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100798.11e-116homeobox-leucine zipper protein HAT5-like
RefseqXP_027153110.11e-116homeobox-leucine zipper protein HAT5
TrEMBLA1DR771e-122A1DR77_CATRO; DNA-binding protein
STRINGXP_009766848.13e-94(Nicotiana sylvestris)