PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1920_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 136aa MW: 16125.6 Da PI: 10.3064

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1920_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.8e-20	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ cra_locus_1920_iso_3_len_1835_ver_3 20 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP
2	bZIP_1	21.7	4.6e-07	72	117	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l e+ cra_locus_1920_iso_3_len_1835_ver_3 72 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 117 9***************************************997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.483	15	79	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	17	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.87E-18	19	83	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-17	20	78	IPR001356	Homeobox domain
CDD	cd00086	2.51E-13	20	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.2E-20	22	75	IPR009057	Homeodomain-like
CDD	cd14686	0.00195	72	111	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.4E-4	76	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MATACKDGNS NKSAVMDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF 120 RQQTPTVILK FFSLSI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462437.1	2e-73	PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X2
Refseq	XP_009378434.1	8e-76	PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial
Refseq	XP_011072422.1	2e-73	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
Refseq	XP_013724776.1	4e-75	homeobox-leucine zipper protein ATHB-15-like
Refseq	XP_016743819.1	7e-76	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Refseq	XP_021642839.1	2e-73	homeobox-leucine zipper protein ATHB-8-like
Refseq	XP_022871101.1	4e-74	homeobox-leucine zipper protein ATHB-15-like
Refseq	XP_023548534.1	2e-73	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	5e-73	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A2I0LG28	1e-76	A0A2I0LG28_PUNGR; Uncharacterized protein (Fragment)
STRING	XP_009378434.1	3e-75	(Pyrus x bretschneideri)
STRING	evm.model.supercontig_109.22	8e-73	(Carica papaya)
STRING	XP_008462436.1	1e-72	(Cucumis melo)
STRING	XP_004302866.1	1e-72	(Fragaria vesca)

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]