PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19261_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 341aa    MW: 36553.5 Da    PI: 6.0548
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19261_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.2e-17224260135
                                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                           C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg+
  cra_locus_19261_iso_1_len_1649_ver_3 224 CTHCGTSSksTPMMRRGPAGPRTLCNACGLFWANKGT 260
                                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.68191126IPR010399Tify domain
SMARTSM009793.0E-1091126IPR010399Tify domain
PfamPF062001.8E-1195125IPR010399Tify domain
PfamPF062035.0E-15158199IPR010402CCT domain
PROSITE profilePS5101712.58158200IPR010402CCT domain
SMARTSM004018.3E-15218271IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.37218275IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-12220267No hitNo description
Gene3DG3DSA:3.30.50.101.9E-16223265IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.15E-16224270No hitNo description
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
PfamPF003203.9E-15224260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MYAQAQRPVT APSRGQGQVH VKYSPVGDGE DSNAAVCGAA GGESIENAQI VDFDEGSTIG  60
GLDGVEVVPH ESMYNGGAAA VCSDGMALAQ TGDVSNQLTL SFRGQVYVFD SVSTEKVQAV  120
LLLLGGCEYT PGTQGVEGSY QNPRGFTEYV GRCSDPKRAE SLNRFRQKRK ERCFEKKIRY  180
NVRQEVALRM QRKKGQFAAR NSEESMVSDV AEESQNDNQS EILCTHCGTS SKSTPMMRRG  240
PAGPRTLCNA CGLFWANKGT LRDLSKKLQP AAEEDEGDSD SDYGVPIGTS ASISHPNTAF  300
SAGKTSALAA EQXLKTVSPL ACSLITPVTC GMFSTNCRHV W
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148698.11e-133GATA transcription factor 25-like
SwissprotQ9LRH63e-74GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A068TXX61e-129A0A068TXX6_COFCA; Uncharacterized protein
STRINGXP_010099559.16e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140301012
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]