PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19330_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 322aa    MW: 35332.4 Da    PI: 7.6242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19330_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.23.9e-34189246259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+ver+ +dp++v++tYeg+Hnh+
  cra_locus_19330_iso_2_len_1364_ver_3 189 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCLNDPSLVITTYEGQHNHQ 246
                                           8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-36173248IPR003657WRKY domain
SuperFamilySSF1182909.55E-30180248IPR003657WRKY domain
PROSITE profilePS5081131.973183248IPR003657WRKY domain
SMARTSM007744.4E-40188247IPR003657WRKY domain
PfamPF031061.1E-26189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEMKRAVLKM EDPIPSLFSD DYFTLISSNP SSSSSASFMD YTANEGGFME LLQGVHDFGS  60
LSSSSSGWFE EAAPSSNYQV WTQPAKVEAP LNYEAAVATT AAAADSAAAP ATPCSNSSSI  120
SSDSCGGALN DDLSKPPAAA AAAEEEEKHK TNKHLKAKKG STTGNEKKKK REREARFAFM  180
TKSDVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTSASCN VKKRVERCLN DPSLVITTYE  240
GQHNHQTPLL QHRHRHSSPS PLHLLPPFMH SDQLTPPFNY CVSSRIPTNT NPNLVLPPAG  300
SLLRDDGLLQ DIIPHATIIR NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28178248777Probable WRKY transcription factor 4
2lex_A4e-28178248777Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010259241.12e-53(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479