PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_19395_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 178aa MW: 20586.8 Da PI: 5.2054

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19395_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	4.8e-30	16	73	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++dp+v+++tY+++Hnh cra_locus_19395_iso_1_len_1048_ver_3 16 DCWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDPTVLIVTYTSTHNHA 73 99*********************9988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-30	6	73	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-25	13	73	IPR003657	WRKY domain
SMART	SM00774	2.3E-33	14	74	IPR003657	WRKY domain
PROSITE profile	PS50811	29.712	16	75	IPR003657	WRKY domain
Pfam	PF03106	4.9E-25	16	72	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
METTDKKQKK EGPPLDCWSW RKYGQKPIKG SPYPRGYYRC STSKGCSAKK QVERCRTDPT 60 VLIVTYTSTH NHATTVVASS DLVEKQKEKV MTPKQEEEKE ESVKNEKLGG SEDPFRENIE 120 SENPCETYEN ITTTTTTSSY KSEENDFYDE LEELPTSSFF SSFMRRNFFE ERILVNPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-19	16	72	18	76	Disease resistance protein RRS1
5w3x_D	5e-19	16	72	18	76	Disease resistance protein RRS1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834230.1	6e-61	PREDICTED: probable WRKY transcription factor 35
TrEMBL	A0A022S217	1e-59	A0A022S217_ERYGU; Uncharacterized protein
TrEMBL	A0A0D5Y9C7	1e-59	A0A0D5Y9C7_SALMI; WRKY protein
STRING	Migut.D00078.1.p	2e-60	(Erythranthe guttata)