PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_19395_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 220aa MW: 25278.3 Da PI: 8.1828

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19395_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.3e-30	58	115	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++dp+v+++tY+++Hnh cra_locus_19395_iso_2_len_1187_ver_3 58 DCWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDPTVLIVTYTSTHNHA 115 99*********************9988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-30	47	115	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-25	55	115	IPR003657	WRKY domain
SMART	SM00774	2.3E-33	56	116	IPR003657	WRKY domain
PROSITE profile	PS50811	29.712	58	117	IPR003657	WRKY domain
Pfam	PF03106	7.4E-25	58	114	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEDTNSSASE KFNPKISKES LPPAQKHKKR KVAQKVIVTT VKMETTDKKQ KKEGPPLDCW 60 SWRKYGQKPI KGSPYPRGYY RCSTSKGCSA KKQVERCRTD PTVLIVTYTS THNHATTVVA 120 SSDLVEKQKE KVMTPKQEEE KEESVKNEKL GGSEDPFREN IESENPCETY ENITTTTTTS 180 SYKSEENDFY DELEELPTSS FFSSFMRRNF FEERILVNPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-19	58	114	18	76	Disease resistance protein RRS1
5w3x_D	7e-19	58	114	18	76	Disease resistance protein RRS1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834230.1	2e-66	PREDICTED: probable WRKY transcription factor 35
TrEMBL	A0A022S217	4e-65	A0A022S217_ERYGU; Uncharacterized protein
STRING	Migut.D00078.1.p	6e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11281	20	25