PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19580_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 283aa    MW: 30761 Da    PI: 7.8962
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19580_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-3065124159
                                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  cra_locus_19580_iso_1_len_1028_ver_3  65 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 124
                                           58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-3350126IPR003657WRKY domain
SuperFamilySSF1182903.66E-2858126IPR003657WRKY domain
PROSITE profilePS5081129.18460126IPR003657WRKY domain
SMARTSM007743.2E-3765125IPR003657WRKY domain
PfamPF031061.6E-2766124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDIDLSLNLD PQQHQEEDKT PAAAATEEEN KLQMKSIMNH AAASASPPNR KARVSVRARC  60
ETATMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR KQVQRCLEDM SILITTYEGT  120
HNHPLPVGAT AMASTATATA PPPPAASFML LDSSNYGISN FNLHQSPLLF PYHNNNNSPI  180
SSYPNSSNKG DIVLDLTNSN HAPPHHHTQQ FPSSSSSNSW NNNNNNNIDE GNHNNSNKLL  240
LGAENVGAIT SDPKFRVAVA AAISSLINNN NKKENYQNGT PTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2252128176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081368.13e-83probable WRKY transcription factor 9 isoform X1
RefseqXP_028081369.13e-83probable WRKY transcription factor 9 isoform X2
SwissprotQ9C9F06e-69WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A2R6Q6G01e-82A0A2R6Q6G0_ACTCH; WRKY transcription factor 9
STRINGXP_010277690.13e-78(Nelumbo nucifera)
STRINGXP_010065508.14e-78(Eucalyptus grandis)