PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19661_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 378aa    MW: 41396.7 Da    PI: 6.2703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19661_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.8e-07164185223
                                           EETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                            C +Cgk F+r  nL+ H+r H
  cra_locus_19661_iso_1_len_1169_ver_3 164 FCDICGKGFKRDANLRMHMRAH 185
                                           6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.32E-6160186No hitNo description
SMARTSM003550.0017163185IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-6163185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.196163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SMARTSM0035562213246IPR015880Zinc finger, C2H2-like
SMARTSM003559.2251272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704251277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
AAFTHRRQNT SLSTMSFPGD LPSSSANPPG GDVTFLGGAD PTVPLLNLSS VHNRMDVLQK  60
FLSDSINSNT LISKDRMDMV SAEISSAIQQ IIVNGAALLA CAETANLSGG EVRPANFQSG  120
SAGMTGSEDK VLDTKSELIE DEDGDDCEII ELDSVELLAE HIHFCDICGK GFKRDANLRM  180
HMRAHGNQYK TPEALAKPEK LIESENGIRR TRFSCPFVGC NRNKQHKKFR PLKSVICVKN  240
HFKRSHCPKM HSCDKCKKNF AVVADLKSHL KHCGETKWKC SCGTNFSRKD KLFGHMALFE  300
GHMPAVLDEE DGEQGKGATA VKKMELETGS SSNGFFDGLI DDGFGSIDNY CFQDLLGSSP  360
NLSNNDGLDI EMDGFFNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079346.11e-165protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
RefseqXP_027178723.11e-165protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A068TYT61e-162A0A068TYT6_COFCA; Uncharacterized protein
STRINGXP_009626824.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126