PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20067_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 224aa    MW: 24903.4 Da    PI: 5.1652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20067_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-171770156
                                  AP2  1 sgykGVrwdk.krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                         + y+G+r++k ++++Wv+e+r+p++   ++r++lg++ tae+Aa+a++ a+++l+g+
  cra_locus_20067_iso_1_len_785_ver_3 17 PVYRGIRRRKiNSNKWVCELREPTK---QARIWLGTYPTAEMAARAYDVAALALRGN 70
                                         68****877724566*******864...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-121769IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-201879IPR016177DNA-binding domain
SMARTSM003803.8E-261883IPR001471AP2/ERF domain
PROSITE profilePS5103221.8251877IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-281879IPR001471AP2/ERF domain
CDDcd000181.77E-271979No hitNo description
PRINTSPR003671.5E-51930IPR001471AP2/ERF domain
PRINTSPR003671.5E-54359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
XPKKKAGRKK FKETRHPVYR GIRRRKINSN KWVCELREPT KQARIWLGTY PTAEMAARAY  60
DVAALALRGN LACLNFADSV YRLPVPSSTD VKDIRKAAAK AAEAFRPQEC GDYYEDEGSA  120
STGTGSDDSG SGTNNLNFDN EANSEKEMKM KMDGFEGQSS SSGSGNNYNN NGYFMDDEAL  180
FDMPGLMTSM AEGLLLSPPH CLQNDSNWDD VETNADMSLW NFPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1216761271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1725RKKFKETRHPVYRGIRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183331.16e-88dehydration-responsive element-binding protein 1A-like
TrEMBLA0A068UQD52e-84A0A068UQD5_COFCA; Uncharacterized protein
STRINGXP_010278524.14e-75(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183