PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_20083_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 432aa MW: 49396.6 Da PI: 5.1813

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_20083_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.1	9.8e-18	123	205	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekk 70 Wt+qe+ Li+a++e++ +l++g+lk+ +Weevs + ++ g+ ++++qC++k+e+l+kry+++k cra_locus_20083_iso_2_len_1596_ver_3 123 WTHQETVNLIQAYQEKWYSLKKGQLKASQWEEVSVTVaARCGYdepYKTATQCRHKMEKLRKRYRAEKVKPYP 195 ********************************99975667743347****************9987775 PP trihelix 71 rtsessstcpyfdqle 86 ++++yf+ ++ cra_locus_20083_iso_2_len_1596_ver_3 196 ------NSWQYFELMD 205 ......3488998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.11	122	183	IPR017877	Myb-like domain
Pfam	PF13837	2.5E-19	122	207	No hit	No description
SMART	SM00595	2.3E-4	130	212	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
RPGVQHKYIR VGSINYITRT TTTISNCNRA SSTNRLTTST ATTPHHTTNN QTLTTVTAVG 60 KFTMANPPSS SSSPFLQPSH PIYHPHSTSS PSEHPSSPKL KPKPESTAET DLTPPKKTPP 120 LPWTHQETVN LIQAYQEKWY SLKKGQLKAS QWEEVSVTVA ARCGYDEPYK TATQCRHKME 180 KLRKRYRAEK VKPYPNSWQY FELMDRMERG PLPIAARPVA VVKYPQNSNS AGNDDDDDDS 240 DSDDGDVSYG GLDAKKNKLK SINNIVRGDL GMSSNSNRNL NRMTTNPNFG GGGNDRGLRH 300 MRNSMAEKRK NDFDDSDEEE GEDEEEEEEE EEEAEEEEED EEEEEEDGEE EKENEEGRGV 360 LRKELAAEIR GFAERFMRME NKKIEMMKET ERYRMEMENK RMEMIIESQR KIMDTIGRAF 420 GAHKKVKMTQ EI

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

RPGVQHKYIR VGSINYITRT TTTISNCNRA SSTNRLTTST ATTPHHTTNN QTLTTVTAVG  60
KFTMANPPSS SSSPFLQPSH PIYHPHSTSS PSEHPSSPKL KPKPESTAET DLTPPKKTPP  120
LPWTHQETVN LIQAYQEKWY SLKKGQLKAS QWEEVSVTVA ARCGYDEPYK TATQCRHKME  180
KLRKRYRAEK VKPYPNSWQY FELMDRMERG PLPIAARPVA VVKYPQNSNS AGNDDDDDDS  240
DSDDGDVSYG GLDAKKNKLK SINNIVRGDL GMSSNSNRNL NRMTTNPNFG GGGNDRGLRH  300
MRNSMAEKRK NDFDDSDEEE GEDEEEEEEE EEEAEEEEED EEEEEEDGEE EKENEEGRGV  360
LRKELAAEIR GFAERFMRME NKKIEMMKET ERYRMEMENK RMEMIIESQR KIMDTIGRAF  420
GAHKKVKMTQ EI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027176521.1	1e-142	trihelix transcription factor ASIL2
TrEMBL	A0A068U5P8	1e-141	A0A068U5P8_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400051788	1e-124	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12466	15	16