PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2010_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 332aa MW: 36800.5 Da PI: 7.8076

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2010_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	6e-08	3	23	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ cra_locus_2010_iso_1_len_1962_ver_3 3 ICTFYQK-GACAYGSRCRYEHV 23 7****.*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.018	1	24	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	3	22	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	3	23	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.544	3	25	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.343	110	137	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0023	111	136	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	1.06E-13	167	243	No hit	No description
Gene3D	G3DSA:3.30.40.10	1.9E-10	172	238	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	5.12E-4	178	238	No hit	No description
PROSITE profile	PS50089	12.475	179	237	IPR001841	Zinc finger, RING-type
SMART	SM00184	6.8E-8	179	236	IPR001841	Zinc finger, RING-type
Pfam	PF00097	1.1E-7	179	236	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE pattern	PS00518	0	203	212	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00356	0.28	266	294	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.385	266	295	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MXICTFYQKG ACAYGSRCRY EHVKVYQSQS SASSSSKTYP SQYTCSDSIH AARPPGPVLG 60 TVGHVLGVSS EAPVINRSFL PSGEPAWAEN SGHGGIPEFS GIGESRSLNP ADHPICSFAA 120 AGNCPRGEMC PHIHGDMCPI CGKHCLHPFR PQEREDHMKT CFQRQKHLEA LKHSQEIECS 180 VCLERVLSKP TAAERKFGIL SECDHPFCIS CIRNWRSSSS SAGMDVNSAV RACPICRKLS 240 YFVIPSVIWY ANKDEKEEIV DSYKAKLRSI DCKHFDFGNG SCPFGTSCFY KHAYRDGRLE 300 EVVLRHLGAE DGQTVIAKDI RLSDFFSSLQ IR

Functional Description ? help Back to Top
Source	Description
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113709.1	0.0	putative RING-type E3 ubiquitin transferase C3H69 isoform X2
Swissprot	Q5ZA07	1e-142	C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBL	A0A2R6QKR4	1e-167	A0A2R6QKR4_ACTCH; Zinc finger CCCH domain-containing protein
STRING	XP_009627500.1	1e-168	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sahi VP, et al. A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo. Plant Signal Behav, 2012. 7(3): p. 375-81 [PMID:22499205] Wadekar HB,Sahi VP,Morita EH,Abe S MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare). Planta, 2013. 237(4): p. 1083-95 [PMID:23262670]