PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2010_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 414aa    MW: 45999.9 Da    PI: 7.7594
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2010_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-0885105526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C f+++ G C yG+rC++ H+
  cra_locus_2010_iso_5_len_1871_ver_3  85 ICTFYQK-GACAYGSRCRYEHV 105
                                          7******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.1E-75277IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-55278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0475279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.74680107IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-482106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-582104IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-585105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-485104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.343192219IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023193218IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.36E-13249325No hitNo description
Gene3DG3DSA:3.30.40.102.7E-10254320IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.97E-4260320No hitNo description
SMARTSM001846.8E-8261318IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.475261319IPR001841Zinc finger, RING-type
PfamPF000971.6E-7261318IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.28348376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385348377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
ENIADXGTVM TFYGHCFRQS NRQSPIFALE LAEPKFMSSD SFLGVNLAGT MSKKRVLCKF  60
FAHGACLKGE HCEYSHDWKD PSNNICTFYQ KGACAYGSRC RYEHVKVYQS QSSASSSSKT  120
YPSQYTCSDS IHAARPPGPV LGTVGHVLGV SSEAPVINRS FLPSGEPAWA ENSGHGGIPE  180
FSGIGESRSL NPADHPICSF AAAGNCPRGE MCPHIHGDMC PICGKHCLHP FRPQEREDHM  240
KTCFQRQKHL EALKHSQEIE CSVCLERVLS KPTAAERKFG ILSECDHPFC ISCIRNWRSS  300
SSSAGMDVNS AVRACPICRK LSYFVIPSVI WYANKDEKEE IVDSYKAKLR SIDCKHFDFG  360
NGSCPFGTSC FYKHAYRDGR LEEVVLRHLG AEDGQTVIAK DIRLSDFFSS LQIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113709.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-166C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A103Y1830.0A0A103Y183_CYNCS; Uncharacterized protein
TrEMBLA0A2R6QKR40.0A0A2R6QKR4_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009627500.10.0(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]