PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2030_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 96aa MW: 9987.08 Da PI: 11.0286

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2030_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	69	92	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H cra_locus_2030_iso_7_len_633_ver_3 69 HTCKSCSRSFGSENALESHKKAkH 92 79*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.69E-5	61	91	No hit	No description
Pfam	PF13912	6.1E-7	69	92	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.3	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
XKVETGKKRA ADSAIKTPVP DKKAKVATPQ KTDLKKGGVH IATPHPSKQA GKTPGNKNQQ 60 TPKSGGGSHT CKSCSRSFGS ENALESHKKA KHSGGK

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By fertilization. {ECO:0000269\|PubMed:15082924}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027072210.1	1e-41	histone deacetylase HDT1-like isoform X1
Refseq	XP_027072211.1	1e-41	histone deacetylase HDT1-like isoform X2
Swissprot	Q6V9I6	5e-31	HDT1_SOLCH; Histone deacetylase HDT1
TrEMBL	A0A068V467	9e-41	A0A068V467_COFCA; Uncharacterized protein
STRING	XP_009612087.1	9e-41	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Lagacé M,Chantha SC,Major G,Matton DP Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules. Plant Mol. Biol., 2003. 53(6): p. 759-69 [PMID:15082924]