PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20465_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 196aa    MW: 22037 Da    PI: 9.6775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20465_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20555155
                                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                         ++++GVr+++ +g+Wv+eIr+p        +r++lg+f+taeeAa+a+++a+  + g
  cra_locus_20465_iso_1_len_755_ver_3  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFDTAEEAARAYDQAAILMSG 55
                                         59*******9.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.59E-36565No hitNo description
SMARTSM003802.1E-40669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-33664IPR001471AP2/ERF domain
PfamPF008478.8E-13653IPR001471AP2/ERF domain
PROSITE profilePS5103222.01663IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-21664IPR016177DNA-binding domain
PRINTSPR003678.5E-11718IPR001471AP2/ERF domain
PRINTSPR003678.5E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVQKKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAARAYDQAA ILMSGRNAKT  60
NFPVTQTSND VVPKTTNQSS SSSKDIHQLS EILHAKLKKS SKAPSPSLTC LRLDIENSHI  120
GVWQKRAGPS SDSNWVMTVE LHKNNNNGGD GALDSPTSPM SMESERLRSE MEEEQRIALQ  180
MIEELLNINS ITVCPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-176631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594389.12e-93PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-72WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A1S4B9228e-92A0A1S4B922_TOBAC; ethylene-responsive transcription factor WIN1-like
STRINGXP_009594389.18e-93(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]