PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20557_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 26914.4 Da    PI: 9.2161
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20557_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.54.1e-24958151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         k+ien  nrqvtfskRr+g+lKKA+EL +LC aevaviifsstgk ye++s
  cra_locus_20557_iso_1_len_775_ver_3  9 KKIENINNRQVTFSKRRAGLLKKAKELAILC-AEVAVIIFSSTGKPYEFAS 58
                                         68*****************************.7****************86 PP
2K-box67.93.5e-23831749100
                                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                          +++a++ ++q +++ Lk+e+ +Lq  qR+++G++L+sLs+keLq+Le+qL++++ +++++K+++lleq+e++  
  cra_locus_20557_iso_1_len_775_ver_3  83 NATANQHESQPHVNALKSEVAKLQLMQRQMMGKELGSLSFKELQKLEHQLNEAILTVKDRKEQVLLEQLEKSIL 156
                                          56778889999*************************************************************** PP

                                K-box  83 kekelqeenkaLrkklee 100
                                          +e+++  en+aLr+++ee
  cra_locus_20557_iso_1_len_775_ver_3 157 QEQKTLLENEALREQIEE 174
                                          ***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-37159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.02160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-29282IPR002100Transcription factor, MADS-box
CDDcd002652.57E-40276No hitNo description
PRINTSPR004046.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-162338IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1787172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.93588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKK IENINNRQVT FSKRRAGLLK KAKELAILCA EVAVIIFSST GKPYEFASSR  60
MEQILHRYNS NSQASKLILT DENATANQHE SQPHVNALKS EVAKLQLMQR QMMGKELGSL  120
SFKELQKLEH QLNEAILTVK DRKEQVLLEQ LEKSILQEQK TLLENEALRE QIEELKGLGQ  180
SNGVGIGRKS SGGSWSTVCD CSRSDKDGNS DTSLRLGLSV DICNKRKVPK VEANTNDSES  240
X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-19168169MEF2C
5f28_B8e-19168169MEF2C
5f28_C8e-19168169MEF2C
5f28_D8e-19168169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069012.11e-118MADS-box transcription factor 23-like isoform X1
RefseqXP_027073038.11e-117MADS-box transcription factor 23-like isoform X1
SwissprotQ9M2K89e-57AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A068V0101e-113A0A068V010_COFCA; Uncharacterized protein
STRINGXP_009758657.16e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226