PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20963_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TCP
Protein Properties Length: 213aa    MW: 23728.6 Da    PI: 11.1088
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20963_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.4e-35591692108
                                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.. 73 
                                          +g+kdrhsk++T++g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak ai++l ++   s+ ++  
  cra_locus_20963_iso_1_len_945_ver_3  59 TGRKDRHSKVCTARGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLMKEAKSAIDALDDSAHASQINSti 132
                                          79**************************************************************4444422235 PP

                                  TCP  74 ..eaesssssasnsssgkaaksaakskksqksaasal 108
                                            ++++++++ +++ +  ++++  +++++q ++++ l
  cra_locus_20963_iso_1_len_945_ver_3 133 ltQTVDHQNQYQSQLQYMNCNFFLPQSSAQGQHNQGL 169
                                          5555555555554444444555444444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.9E-3359158IPR005333Transcription factor, TCP
PROSITE profilePS5136932.26661119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
XKKKKKKKKW SNFPSLXRRI LPKRITTRVV SSSSKLKLKK AAAKGDIIEM HGGRIVRSTG  60
RKDRHSKVCT ARGPRDRRVR LSPNTAIQFY DVQDRLGYDR PSKAIDWLMK EAKSAIDALD  120
DSAHASQINS TILTQTVDHQ NQYQSQLQYM NCNFFLPQSS AQGQHNQGLN CNLPLQDHHL  180
PFVFGPGTGV GAQQGVFSNA PAAAANISIS RNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2066119154Putative transcription factor PCF6
5zkt_B3e-2066119154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022845807.12e-45transcription factor TCP3-like isoform X1
RefseqXP_022845808.12e-45transcription factor TCP3-like isoform X2
TrEMBLM1C3U23e-46M1C3U2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000591175e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145