PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2098_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 229aa    MW: 25702.3 Da    PI: 10.8494
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2098_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.5e-19132165134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  cra_locus_2098_iso_1_len_1034_ver_3 132 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 165
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-16126176IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.675126162IPR000679Zinc finger, GATA-type
CDDcd002021.10E-16131188No hitNo description
Gene3DG3DSA:3.30.50.108.0E-15131163IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.04E-15131189No hitNo description
PfamPF003202.1E-17132165IPR000679Zinc finger, GATA-type
PROSITE patternPS003440132157IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
XLGMSSRTRT RTQESGSFQA HSPVSVLDSS RSSSVRKSLN IKSDIVIPVR TRSKRARPSN  60
LNPWFVMPPI SSARKMIRSR KTKEKKKRVS PVSLVKNADE PFQPSEEELL NVSADAAEKN  120
GSQQRSVAMK KCTHCEVTKT PQWREGPMGP KTLCNACGVR YRSGRLFPEY RPAASPTFVP  180
TIHSNSHKKV IEMRKKATVQ EEMAVHDEVP VSPPPEFVPM SSSLFDFIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085919.11e-101GATA transcription factor 11-like
RefseqXP_027085926.11e-101GATA transcription factor 11-like
RefseqXP_027176385.11e-101GATA transcription factor 11-like
TrEMBLA0A068UF302e-86A0A068UF30_COFCA; Uncharacterized protein
STRINGXP_009795845.15e-81(Nicotiana sylvestris)