PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2098_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 334aa    MW: 36768.7 Da    PI: 7.5027
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2098_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19237270134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  cra_locus_2098_iso_2_len_1350_ver_3 237 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 270
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-16231281IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.675231267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14236268IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.68E-17236293No hitNo description
SuperFamilySSF577167.6E-15236294No hitNo description
PfamPF003203.6E-17237270IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
XGLVCLADLS MPLCHTKTVQ KKMNMVEPNY LDGFLDAAPD DKGFPEDGPL DILDFLDFPM  60
ESLEDDTGGD WDASKSHCLG PIPTDAMLGL PPVPQDNVGN VFPHPQPNAP VGGAGETQES  120
GSFQAHSPVS VLDSSRSSSV RKSLNIKSDI VIPVRTRSKR ARPSNLNPWF VMPPISSARK  180
MIRSRKTKEK KKRVSPVSLV KNADEPFQPS EEELLNVSAD AAEKNGSQQR SVAMKKCTHC  240
EVTKTPQWRE GPMGPKTLCN ACGVRYRSGR LFPEYRPAAS PTFVPTIHSN SHKKVIEMRK  300
KATVQEEMAV HDEVPVSPPP EFVPMSSSLF DFIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085919.11e-128GATA transcription factor 11-like
RefseqXP_027085926.11e-128GATA transcription factor 11-like
TrEMBLA0A068UF301e-111A0A068UF30_COFCA; Uncharacterized protein
STRINGXP_009795845.11e-107(Nicotiana sylvestris)
STRINGXP_009621793.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149