PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2098_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 312aa    MW: 34382 Da    PI: 6.873
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2098_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19215248134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  cra_locus_2098_iso_3_len_1516_ver_3 215 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 248
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.675209245IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-16209259IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14214246IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-17214271No hitNo description
SuperFamilySSF577167.13E-15214272No hitNo description
PfamPF003203.3E-17215248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNMVEPNYLD GFLDAAPDDK GFPEDGPLDI LDFLDFPMES LEDDTGGDWD ASKSHCLGPI  60
PTDAMLGLPP VPQDNVGNVF PHPQPNAPVG GAGETQESGS FQAHSPVSVL DSSRSSSVRK  120
SLNIKSDIVI PVRTRSKRAR PSNLNPWFVM PPISSARKMI RSRKTKEKKK RVSPVSLVKN  180
ADEPFQPSEE ELLNVSADAA EKNGSQQRSV AMKKCTHCEV TKTPQWREGP MGPKTLCNAC  240
GVRYRSGRLF PEYRPAASPT FVPTIHSNSH KKVIEMRKKA TVQEEMAVHD EVPVSPPPEF  300
VPMSSSLFDF IY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085919.11e-129GATA transcription factor 11-like
RefseqXP_027085926.11e-129GATA transcription factor 11-like
TrEMBLA0A068UF301e-111A0A068UF30_COFCA; Uncharacterized protein
STRINGXP_009795845.11e-107(Nicotiana sylvestris)
STRINGXP_009621793.11e-107(Nicotiana tomentosiformis)