PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_211_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 179aa    MW: 19895.5 Da    PI: 8.2477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_211_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000396984116
                                        EEETTTTEEESSHHHH CS
                             zf-C2H2  1 ykCpdCgksFsrksnL 16
                                        ykC+ C+k Fs+   L
  cra_locus_211_iso_2_len_1216_ver_3 69 YKCSVCDKAFSSYQAL 84
                                        9**********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-46988IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.2216997IPR007087Zinc finger, C2H2
PfamPF139125.3E-106988IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MALEALNSPT TPTPVFQYEN AATLRYLDQP WAKGKRSKRP RSVEPPPPQH QQQHNIPSSS  60
SSDPPKLLYK CSVCDKAFSS YQALGGHKEV TGNSPQPPPE VXXXXXXXXX XXXXXXXXXX  120
XXXXGSTNTH SNRDFDLNLP ALPEFWLAAA AGDDEVSSPH PAKRSRFALP IKVENHQIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092500.19e-31zinc finger protein ZAT10-like
RefseqXP_028117838.19e-31zinc finger protein ZAT10-like
TrEMBLQ5TJD42e-39Q5TJD4_CATRO; Zinc finger DNA-binding protein